OHDSI Technology Stack
Karthik Natarajan (Columbia University)
Mark Velez (Columbia University)
Lee Evans (LTS Computing LLC)
Taha Abdul-Basser (Columbia University)
Please copy the contents of the USB drive to your hard disk now.
You will need ~45GB free disk space available.
Frank Defalco
Janssen
Lee Evans
LTS Computing LLC
Taha Abdul-Basser
Columbia University
Karthik Natarajan
Columbia University
Mark Velez
Columbia University
Frank Defalco
Janssen
Lee Evans
LTS Computing LLC
Taha Abdul-Basser
Columbia University
Karthik Natarajan
Columbia University
Mark Velez
Columbia University
Jungmi Han
Columbia University
Start time Section
13:00 Introduction
Atlas Overview
Lab 1: OHDSI in a Box
14:00 Break
Architectural Overview
Lab 2: Installing OHDSI Platform
15:45 Break
Lab 3: Using Achilles
Wrap up and Q&A
17:00 End
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OHDSI R
packages
Studio
Methods Library
Atlas
WebAPI
Calypso
Penelope
Tomcat
cdm
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WebAPI
Atlas
Penelope
Calypso
public ohdsi
pgAdmin
Broadsea
OHDSI R
packages
Studio
Methods Library
WebTools
Tomcat
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WebAPI
Atlas
Broadsea
WebTools
Tomcat
cdm ohdsi
CDM
OHDSI
repository
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http://localhost:8787
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library(‘devtools’)
library(‘Achilles’)
connectionDetails<- createConnectionDetails(dbms
= "postgresql", user = “ohdsi”, password =
“ohdsi”, server = “localhost”)
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achilles(connectionDetails,\
cdmDatabaseSchema="public",\
resultsDatabaseSchema="ohdsi",\
sourceName="ohdsi_ds")
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exportToJson(connectionDetails,"public",
"ohdsi")
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Atlas > Datasources
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